Mykrobe-tools's repositories
mykrobe-atlas-api
Server API for Atlas
mykrobe-atlas-distance-data
Pipelines and scripts for calculating genetic distance between samples
mykrobe-atlas-jsonschema
JSON Schemas associated with Mykrobe Atlas
atlas_ena_curation
Automated pipeline built on top of clockwork and the kmersearch-api for download and processing of tb samples from the ENA
mykrobe-atlas-distance-client
REST API client library for accessing Mykrobe Atlas distance API
mykrobe-atlas-keycloak
Keycloak configuration for Atlas
mykrobe-atlas-kmersearch-api-client
REST API client library for accessing Mykrobe Atlas Kmersearch API
mykrobe-atlas-tracking-api
Sample tracking service for Mykrobe Atlas project
mykrobe-data
Data for mykrobe command line tool
mykrobe-lineage-test
Test species and lineage calls made by mykrobe
mykrobe-atlas-analysis-api
The analysis API and task manager for Mykrobe atlas
mykrobe-atlas-background-variants-db
A Mongo db which hosts tb background variants to support Mykrobe make probes functionality for Atlas
mykrobe-atlas-data-upload
Documentation and scripts for uploading preprocessed analysis data to Kubernetes hosted applications.
mykrobe-atlas-insight
Insight pipeline for Mykrobe Atlas