MycoAI's repositories
.github
Repository for GH organization scaffolding
dnabarcoder
This repository is used to compute similarity cutoffs for different clades of fungi and other organisms. These computed similarity cutoffs are then utilized for fungal identification and classification using BLAST.
fMLC
This tool is designed to cluster and to compute a similarity structure for a large dataset of DNA sequences for visualization. For small datasets containing up to hundreds of thousands of sequences, we can use dnabarcoder.
fungiclassifiers
This repository employs Convolutional Neural Networks (CNNs) and Deep Belief Networks (DBNs) for fungal identification and classification, comparing them with BLAST and RDP classifiers
MycoAI.github.io
MycoAI's website
protaxfungi
Probabilistic classification of fungi ITS
UNITE_ITSClassifier
Fungal UNITE ITS reference set formatted for the Ribosomal Database Project (RDP) classifier.