Musketeer-D / T2T_Encode_Analysis

Scripts for recapitulating the Encode reanalysis using the T2T chm13 reference assembly

T2T Encode epigenetic reanalysis

These scripts will recapitulate the analysis performed for the reanalysis of Encode data using the chm13 reference genome.

Prerequisites:

• Snakemake
• Python3
• Conda
• Git

Running the analysis:

First, adjust values in the snakefile to reflect the appropriate specs for your system.

Second, run the snakefile with the --use-conda flag.

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Any questions should be directed to [e-mail]