Musen Zhou's starred repositories

OpenBB

Investment Research for Everyone, Everywhere.

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pykan

Kolmogorov Arnold Networks

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dgl

Python package built to ease deep learning on graph, on top of existing DL frameworks.

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Ice

Powerful menu bar manager for macOS

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HEBO

Bayesian optimisation & Reinforcement Learning library developped by Huawei Noah's Ark Lab

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seek-tune

An implementation of Shazam's song recognition algorithm.

Language:GoLicense:MITStargazers:1844Issues:12Issues:5

awesome-equivariant-network

Paper list for equivariant neural network

selfies

Robust representation of semantically constrained graphs, in particular for molecules in chemistry

Language:PythonLicense:Apache-2.0Stargazers:659Issues:25Issues:75

papers-for-molecular-design-using-DL

List of Molecular and Material design using Generative AI and Deep Learning

set_transformer

Pytorch implementation of set transformer

Language:Jupyter NotebookLicense:MITStargazers:540Issues:12Issues:19

gt4sd-core

GT4SD, an open-source library to accelerate hypothesis generation in the scientific discovery process.

Language:Jupyter NotebookLicense:MITStargazers:335Issues:17Issues:99

REINVENT4

AI molecular design tool for de novo design, scaffold hopping, R-group replacement, linker design and molecule optimization.

Language:PythonLicense:Apache-2.0Stargazers:327Issues:21Issues:94

bofire

Experimental design and (multi-objective) bayesian optimization.

Language:Jupyter NotebookLicense:BSD-3-ClauseStargazers:213Issues:7Issues:107

gauche

A Library for Gaussian Processes in Chemistry

Language:Jupyter NotebookLicense:MITStargazers:205Issues:6Issues:16

Clapeyron.jl

Clapeyron provides a framework for the development and use of fluid-thermodynamic models, including SAFT, cubic, activity, multi-parameter, and COSMO-SAC.

Language:JuliaLicense:MITStargazers:200Issues:11Issues:125

MolPipeline

A Python package for processing molecules with RDKit in scikit-learn

Language:PythonLicense:MITStargazers:125Issues:6Issues:42

yeast-GEM

The consensus GEM for Saccharomyces cerevisiae

Language:MATLABLicense:CC-BY-4.0Stargazers:95Issues:19Issues:123

SyntheMol

Combinatorial antibiotic generation

Language:PythonLicense:MITStargazers:83Issues:2Issues:9

HydraGNN

Distributed PyTorch implementation of multi-headed graph convolutional neural networks

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Language:Jupyter NotebookLicense:MITStargazers:60Issues:5Issues:18

paretoset

Compute the Pareto (non-dominated) set, i.e., skyline operator/query.

Language:Jupyter NotebookLicense:MITStargazers:49Issues:3Issues:11

usearch-molecules

Searching for structural similarities across billions of molecules in milliseconds

Language:PythonLicense:Apache-2.0Stargazers:46Issues:2Issues:4

chemfunc

Useful functions for working with small molecules

Language:PythonLicense:MITStargazers:38Issues:4Issues:1

atlas

A brain for self-driving laboratories

Language:PythonLicense:MITStargazers:25Issues:3Issues:1

MolFrag

Obtain and organize all feasible fragmentation of molecular methods

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ACGCN

ACGCN: Graph Convolutional Networks for Activity Cliff Prediction Between Matched Molecular Pairs (Park et al., 2022)

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lsfml

Enabling late-stage drug diversification by high-throughput experimentation with geometric deep learning

Language:PythonLicense:MITStargazers:17Issues:0Issues:0

QSAR-activity-cliff-experiments

Exploring QSAR Models for Activity-Cliff Prediction

Language:Jupyter NotebookLicense:MITStargazers:15Issues:3Issues:2
Language:PythonLicense:GPL-2.0Stargazers:12Issues:2Issues:2

Properties-to-molecules-Inverse-Mapping

Mapping properties to molecules in QM7-X

Language:Jupyter NotebookLicense:MITStargazers:6Issues:1Issues:0