The aim of this tutorial is to make you familiar with using dRep to construct a genome set, and using inStrain to analyze that genome set.
See installation.md for the installation instructions
See drep.md for the dRep tutorial
See instrain.md for the inStrain tutorial
In case the steps below fail, intermediate files can be found here - https://zenodo.org/record/7200082#.Y0oAAi2B1qs
dRep documentation: https://drep.readthedocs.io/en/latest/
dRep publication: https://www.nature.com/articles/ismej2017126
inStrain documentation: https://instrain.readthedocs.io/en/latest/
inStrain publication: https://www.nature.com/articles/s41587-020-00797-0
Publication where genomes come from: https://www.nature.com/articles/sdata2017203
Public repo where genomes come from: https://figshare.com/articles/dataset/The_Reconstruction_of_2_631_Draft_Metagenome-Assembled_Genomes_from_the_Global_Oceans/5188273/13