Qinyun Lin's repositories

CS-BTM

python implementation of CS-BTM, a semantics-based hot topic detection method based on BTM

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circdna

Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from cancer and other eukaryotic cells.

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circrna

circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data

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CSYE7200

This new version of CSYE7200 is to replace the old version.

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DayCare

Final Project for CSYE6200

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Kitti-Processing-By-PCL

Process and analysis KITTI data with PCL

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nextflow

working notes about nextflow and some useful scripts

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rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

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smrnaseq

A small-RNA sequencing analysis pipeline

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Harvard-BWH-Circrna

This is a nextflow implementation of Circle RNA Analysis for Harvard Medical School, BWH.

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BTMpy

BTM实现代码

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LFTM

Improving topic models LDA and DMM (one-topic-per-document model for short texts) with word embeddings (TACL 2015)

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