Mouse-Imaging-Centre / minc-stuffs

Scripts and bits of code for minc files.

Mouse-Imaging-Centre/minc-stuffs Issues

voxel_vote produces broken voted file for ultra-high res unsigned-int label files
Updated 2 years ago5
voxel_vote is slow
Updated 2 years ago1
Files outputted from voxel_vote aren't compressed
Updated 4 years ago1
add Python version check to install
Updated 4 years ago
setup.py broken in 0.1.25
Closed 4 years ago2
rotational_minctracc .py has a numeric type comparison error when comparing world co-ordinates
Updated 5 years ago1
Linking to existing HDF5
Closed 5 years ago6
rotational_mintracc crashes if run without a mask
Updated 5 years ago9
Pull in https://github.com/jan-scholz/minc-scripts/tree/develop?
Closed 6 years ago1
Fix vtk_meshconverter before release
Closed 6 years ago7
memory leak in rotational minctracc
Closed 6 years ago
rename --temp-folder in compute_determinant.py
Closed 6 years ago4
Compute_determinant.py should generate a fresh temp folder
Closed 6 years ago6
rotational minctracc takes too long
Updated 6 years ago9
cythonize TFCE
Closed 7 years ago1
TFCE sums negative values as positives
Closed 7 years ago
Tab/space indentation problem volumes_from_labels_only
Closed 8 years ago1
pmincaverage uses too much memory to run?
Updated 8 years ago
remove cython dependency?
Updated 8 years ago2
INSTALL file uninformative
Updated 8 years ago
xfm2tag unsafely assumes image and mask coordinates are the same
Updated 8 years ago1
make/configure fails on a static hdf5 library (version 1.8.11)
Closed 8 years ago2
setup.py broken in 0.1.15
Closed 8 years ago3
Better usage messages for voxel_vote
Closed 8 years ago2
create -copy_header flag for pmincaverage analogous to mincaverage
Updated 8 years ago
produce same output type as input type (pmincaverage)
Updated 8 years ago
Should voxel voting work on a single file?
Closed 8 years ago3
minc_displacement doesn't document what it's for
Updated 8 years ago
rotational_minctracc.py doesn't check shell exit codes
Closed 9 years ago1
rotational_minctracc.py should scale simplex to subject resolution
Updated 9 years ago1
Deal with compression and multiprocessing in pmincaverage
Updated 9 years ago3
replace os.system calls with subprocess calls
Updated 9 years ago
minc_displacement ignores dimension order
Updated 9 years ago
bayes_intensity_update missing from install
Updated 9 years ago
Incorrect vtk_meshconvert.py path specified in setup.py
Closed 9 years ago2
minc_label_ops is hardcoded to work with unsigned short files
Updated 9 years ago
minc_label_ops: allow arbitrary order of command line arguments
Updated 9 years ago1
Verify that tools respect $TMPDIR
Updated 10 years ago
Add an atlas_to_atlas and a mouse_to_mouse script to the repository
Updated 10 years ago
--convert in minc_label_ops should probably be the default?
Updated 10 years ago
minc-stuffs-0.1.4 needs import numpy and include_dirs=[numpy.get_include()]
Closed 10 years ago2
ubyte type for atlases - compute_values_across_segmentation reads in a max of 255 values for any provided atlas
Closed 10 years ago
voxel_vote does not produce proper label files
Closed 10 years ago
abilitiy to add multiple files together as a label file (minc_label_ops)
Updated 10 years ago