Monash Biomedical Imaging (MonashBI)

Monash Biomedical Imaging

MonashBI

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Monash Biomedical Imaging's repositories

arcana-legacy

Abstraction of Repository-Centric ANAlysis - a Python framework

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banana

Brain imAgiNg Analysis iN Arcana (Banana): brain imaging analysis workflows implemented in the Arcana framework

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Monash_rsPET-MR_prep

Scripts used to prepare the Monash rsPET-MR dataset

nipype_arcana_workshop

Materials (slides, notebooks, Dockerfile) for a one day workshop on the use of Nipype and Arcana for neuroimaging analysis (https://nbviewer.jupyter.org/github/MonashBI/nipype_arcana_workshop/blob/master/program.ipynb)

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xnat-eeg-upload

A simple interactive script for uploading EEG/COG data to XNAT

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xnat-docker-compose

Build an XNAT server configuration with Docker Compose

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arcana-xnat-plugin

XNAT plugin containing datatypes required for the Arcana package

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xnat-nif-qc-analysis

A Dockerized XNAT pipeline that extracts key metrics from quality control scans acquired in accordance with the NIF-TDRS SOP

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xnat-simple-upload-plugin

A simple XNAT plugin for uploading non-DICOM files to sessions

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XNAT-Survey-Plugin

XNAT plugin to capture XNAT data in external survey

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