MmCMS package calls CMS subtypes in mouse tissues. The core algorithm is Nearest Template Prediction (NTP) and CMScaller [Guinney 2015; Eide 2017; Hoshida 2010].
Run the following code in R/RStudio to install the package:
#install.packages("devtools")
#devtools::install_github("MolecularPathologyLab/MmCMS")
The MmCMS classifier R package is developed by the DunneLab. Please contact Raheleh Amirkhah for any package related issues, questions, or suggestions.
Amirkhah, R. et al. MmCMS: mouse models’ consensus molecular subtypes of colorectal cancer. Br J Cancer 128, 1333–1343 (2023).