This repository contains miscellaneous scripts used in bioRxiv preprint "A spatial atlas of inhibitory cell types in mouse hippocampus" (https://doi.org/10.1101/431957) Gene selection algorithm is at https://github.com/cortex-lab/Transcriptomics Probe design algorithm is at https://github.com/Moldia/multi_padlock_design Image analysis and cell typing algorithm is at https://github.com/kdharris101/iss (forked version included in this repo) For more information about MATLAB toolbox for Bio-Formats, see https://www.openmicroscopy.org/bio-formats/downloads/ (forked version included in this repo)