Miro Astore's repositories
gnome_ui_scripts
A few scripts to tweak the gnome 3 ui. xdotool required.
gromacs_scripts
assorted scripts for working with gromacs
mdanalysis_scripts
assorted scripts for analysing molecular dynamics simulations.
openmm_workflow
assorted scripts for openmm
pyemma_scripts
scripts for analysing md trajectories with the pyemma libraries.
assorted_scripts
assorted scripts, mostly related to MD or laziness
BioEM
GPU accelerating computing for Bayesian inference of electron microscopy images. BioEM is a publicly available software that enables the characterization of structural models with respect to individual electron microscopy images.
bioinformatics_scripts
assorted scripts associated with bioinformatics, mostly protein sequence analysis/manipulation
cryo_scripts
assorted scripts for dealing with cryoEM data
cryojax
Cryo electron microscopy image simulation and analysis built on JAX.
ion_solvation_openmm
Ion solvation free energy with spherical boundary conditions
mdanalysis
MDAnalysis is a Python library to analyze molecular dynamics trajectories.
miro-astore.github.io
A beautiful, simple, clean, and responsive Jekyll theme for academics
mutation_builder
workflow for building several missense mutations for protein analysis from a template system
namd2_scripts
Assorted scripts for working with namd.
namd_scripts
assorted scripts for running MD simulations in NAMD
thesis_template
a latex template you can use for your phd thesis.