Miraldi Research Lab (MiraldiLab)

Miraldi Research Lab

MiraldiLab

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Systems Immunology at Cincinnati Children's Hospital

Home Page:miraldilab.cchmc.org

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Miraldi Research Lab's repositories

maxATAC

Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks

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maxATAC_data

This repo contains additional resources for the maxATAC Python package.

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ILCnetworks

Gene regulatory networks for intestinal innate lymphoid cells

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infTRN_lassoStARS

Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS

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Interactive_visualization

HAE scripts codebank

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snakeATAC

A snakemake workflow to process ATAC-seq data

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snakeCHIP

A snakemake workflow for ChIP-seq data processing

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Th17_TRN_Networks

Data and notebooks for "Leveraging ATAC-seq data for transcriptional regulatory inference in Th17 Cells" by Miraldi et al.

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