Miraldi Research Lab's repositories
maxATAC_data
This repo contains additional resources for the maxATAC Python package.
Language:Python000
ILCnetworks
Gene regulatory networks for intestinal innate lymphoid cells
Language:Jupyter Notebook000
infTRN_lassoStARS
Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS
Language:Fortran000
Interactive_visualization
HAE scripts codebank
Language:R000
snakeATAC
A snakemake workflow to process ATAC-seq data
Language:RApache-2.0000
snakeCHIP
A snakemake workflow for ChIP-seq data processing
Language:PythonMIT000
Th17_TRN_Networks
Data and notebooks for "Leveraging ATAC-seq data for transcriptional regulatory inference in Th17 Cells" by Miraldi et al.
Language:Jupyter NotebookApache-2.0000