MikeACG

reptDir

R package for annotating replication timing direction

BenchCoexp

automated benchmarking of association measures for coexpression analysis.

CoGTEx-web

convertHGNC

Convert between gene IDs and names using HGNC data

gtfTools

R package to manipulate Gene Transfer Format (GTF) files

hist2dr

linearSNPfoldR

Estimate the effect of single nucleotide polymorphisms in ribonucleic acid secondary structure

Rmutmod

R package to build mutational models

Rmutpheno

R package for mutation phenotype redistribution tests using mutational models

rnaFoldMutSelection

rnasnpRCPP

sequenceDistance

Fast "GenomicRanges" style distance calculation

surfOpt

Python framework for genetic algorithm testing

VIC_matlab

Sequential and Parallel Implementation of Validity Index using Supervised Classifiers in MATLAB