MicroB3-IS / osd-analysis

Repository for all Ocean Sampling Day related source code with information on how-to acquire OSD data

MicroB3-IS/osd-analysis Issues

OSD 2015 Environmental Data?
Updated 6 months ago1
COORDINATES OSD2015
Updated 5 years ago3
Raw fastq files for the Life Watch data set of 2014 (V4-V9) ?
Closed 5 years ago2
Sequencing depth of OSD metagenomes
Updated 6 years ago
Non active links to assembled contigs etc.
Updated 6 years ago1
Where are the data now?
Closed 6 years ago2
Links on OSD wiki are dead....
Closed 7 years ago2
Migrate pre-processing scripts to git:
Updated 7 years ago
add mg-traits pfam table to owncloud
Closed 7 years ago
Comparison of the different assemblers
Closed 9 years ago2
Calculation of the number of organisms
Updated 9 years ago
Wrong cluster reference sequence in otu file
Updated 9 years ago3
normalized 16S/18S?
Updated 9 years ago1
phylogenetic tree
Updated 9 years ago
Biological File Identifiers in Environmental Metadata
Closed 9 years ago3
Bulk download of EBI-metagenomics processed files
Updated 9 years ago11
report the tool versions used for assembly
Updated 9 years ago
OTU table 18S
Updated 9 years ago5
create tables with otu taxa mapping for LGC 16S/18S datasets
Closed 9 years ago1
Update R script for contextual data import and cross-check with MC's data
Closed 9 years ago5
Fix ENVO IDs in contextual data file
Closed 9 years ago4
make mg assemblies available
Closed 9 years ago1
make ancillary data form available
Closed 9 years ago3
make SILVAngs analysis results for LifeWatch Italy samples available
Closed 9 years ago6
Archaeal data?
Updated 9 years ago2
Provide 93% quality-filetered taoxnomy for MED exports
Closed 9 years ago2
submit australia data to ENA
Closed 9 years ago1
submit lifewatch data to ENA
Closed 9 years ago3
make SILVAngs analysis results for Australian samples available
Closed 9 years ago3
SILVAngs report PDF for 16S/18S LGC has inconsistencies
Closed 9 years ago1
Questions about metagnomic data at EMG compared to documentation
Updated 9 years ago19
make metagnomes workable dataset available
Closed 9 years ago
fix truncated osd2014_18s---ssu---otu_mapping.stats and osd2014_16s---ssu---otu_mapping.stats
Closed 9 years ago1
elaborate on data delivery section of pre-processing documentation
Updated 9 years ago
publish documentation on sequence data pre-processing
Closed 9 years ago1
why OTU number in 18S data is very different between file osd2014_18s---ssu---otus and osd2014_18s_lgc_otu_by_sample
Closed 9 years ago5
Make silva-ngs analysis results for LGC data available
Closed 9 years ago2
re-run mg-traits against newers silva db 119.1
Updated 9 years ago