Beast code in Giters

Michael Totty's repositories

SpotSweeper

Spatially-aware quality control for spatial transcriptomics

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Amp_xcorr

Python code for computing amplitude cross-correlation of EEG/LFP data

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Resources-for-in-vivo-ephys

A curated list of resources for learning in vivo electrophysiology. Everything including biological underpinnings, theory, implementation, and analysis

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FiberFlow_old

A Streamlit application for visualizing, processing, and analyzing fiber photometric data from .csv files.

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FrozenPy

Python module for analyzing freezing behavior by thresholding motion data

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A-quick-start-guide-to-Python

A quick start guide to Python with data science in mind, written by a neuroscience PhD student

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Allaway_mouseDlx_LIBD4125

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dotdotdot

Forked respository for dotdotdot software

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Hicks_R_course

R course by Stephanie Hick's

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MuSiC

Multi-subject Single Cell Deconvolution

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NPMpy

Code for curating Neurophotometrics data for analysis in pMat software

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PhAT

A flexible open-source GUI-driven toolkit for photometry analysis

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Photometry-analysis

Code for learning photometry analysis

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Shi_mouseAMY_LIBD4125

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SpecVGs

What the Package Does (One Line, Title Case)

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Test_pypkg

Testing the ook

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TottyEphys

A package containing helper functions for in vivo ephys data analysis

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Yu_crossAMY_LIBD4125

Analysis of Yu et al. (https://www.nature.com/articles/s41421-022-00506-y) cross-species snRNA-seq of the amygdala.

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