Michael Totty's repositories
SpotSweeper
Spatially-aware quality control for spatial transcriptomics
Resources-for-in-vivo-ephys
A curated list of resources for learning in vivo electrophysiology. Everything including biological underpinnings, theory, implementation, and analysis
FiberFlow_old
A Streamlit application for visualizing, processing, and analyzing fiber photometric data from .csv files.
A-quick-start-guide-to-Python
A quick start guide to Python with data science in mind, written by a neuroscience PhD student
dotdotdot
Forked respository for dotdotdot software
Hicks_R_course
R course by Stephanie Hick's
MuSiC
Multi-subject Single Cell Deconvolution
PhAT
A flexible open-source GUI-driven toolkit for photometry analysis
Photometry-analysis
Code for learning photometry analysis
Test_pypkg
Testing the ook
TottyEphys
A package containing helper functions for in vivo ephys data analysis
Yu_crossAMY_LIBD4125
Analysis of Yu et al. (https://www.nature.com/articles/s41421-022-00506-y) cross-species snRNA-seq of the amygdala.