Mfpfox

MAPPING

ChemoProteomic-Detected Amino Acids (CpDAAs) to missense deleteriousness predictions and ClinVar pathogenic mutations

1000_genomes_examples

Examples using R and 1000 genomes data

CADD-scripts

CADD scripts release for offline scoring. For more information about CADD, please visit our website

ccr

Building the constrained coding regions (CCR) model

ChIP-seq-analysis

ChIP-seq analysis notes from Ming Tang

Clustering-Mixed-Data

A repository with various methods for clustering mixed datasets in python

ClustVis

ClustVis web tool

dbnsfp-javasearch

DCell

DCell browser and gene deletion simulator

dnaplotlib

DNA plotting library for Python

dsbook

Repository for data science book

gene_lists

List of gene lists for genomic analyses.

gnomad-browser

gnomad_methods

Hail helper functions for the gnomAD project and Translational Genomics Group

gnomad_qc

GraphBio

GraphBio: a shiny web app to easily perform popular visualization analysis for omics data

LIST

Local Identity and Shared Taxa

machine-learning

Practical Full-Stack Machine Learning

mapResidueFeatures

MISCASTv1.0

mmtf-genomics

Methods for mapping genomic data onto 3D protein structure.

MutScore

pathoscore

pathoscore evaluates variant pathogenicity tools and scores.

PERs

Pathogenic variant enriched regions tutorial, examples and additional files

PLOTS

PythonDataScienceHandbook

Python Data Science Handbook: full text in Jupyter Notebooks

r4ds

R for data science: a book

Targeted_Literature_Reviews_via_webscraping

Web scraping to get articles for a given query. It returns an spreadsheet with titles, abstracts, doi and references of the article

VPOT

VPOT - Variant Prioritisation Ordering Tool. VPOT is a Python tool written to allow prioritisation of variants in ANNOVAR annotated VCF files.

WGS