MercaderLabAnatomy / PUB_Botos_et_al_2022

Transcriptomic data meta-analysis reveals common and injury model specific gene expression changes in the regenerating zebrafish heart.

Shiny app:

PUB_Botos_et_al_2022

Transcriptomic data meta-analysis reveals common and injury model specific gene expression changes in the regenerating zebrafish heart.

Meta-analysis code structured in different analysis steps.

• Download data with the raw folder
• Pre-process the data following the sequential steps:multiqc to fastp to optional rechech with multiqc to indexing the reference genome and prepare mapping with STAR within indexing to mapping
• Processing of the data using R code can be found in folder r_processing
• Pub Med query the genes of interest with pubmed_query_processing
• Web Application follows and requires analysis with Cytoscape and further R integration
• Shiny app code is in the folder shiny_app

P.S - The app usually takes 2-3 minutes to load, if it takes longer please reload the link