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UW-Madison McMahon Lab (McMahonLab)

UW-Madison McMahon Lab

McMahonLab

Geek Repo

Organization for Trina McMahon's Lab at UW-Madison

Location:Madison, WI

Home Page:https://mcmahonlab.wisc.edu/

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UW-Madison McMahon Lab's repositories

TaxAss

16S taxonomy assignment using an ecosystem-specific database.

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FEET

Finding Extracellular Electron Transfer proteins using FeGenie, HMMs, and cytochrome motifs.

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MAGstravaganza

Investigation of how freshwater nutrient cycling is linked at the organism level

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OMD-TOIL

Analysis of OMD-TOIL metatranscriptomic data

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FWMFG

Freshwater microbial field guide

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geodes

Diel transcriptomics of freshwater lakes

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North_Temperate_Lakes-Microbial_Observatory

Data and scripts associated with the McMahon Lab's North Temperate Lakes - Microbial Observatory

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Scripts

Scripts, protocols, and workflows for computational analyses.

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blast2ani

Garcia, S. L., Stevens, S. L. R., Crary, B., Martinez-Garcia, M., Stepanauskas, R., Woyke, T., Tringe, S. G., Andersson, S., Bertilsson, Malmstrom, R. R., McMahon, K. D. (ISMEJ). Genome level exploration of abundant and uncultivated freshwater bacteria reveals distinct and dynamic populations.

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EBPR_pH_logger

Code for running Arduino pH logger and analyzing data

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Rdump

An unrelenting wasteland of user-UN-friendly R scripts and block code

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git_wksp

McMahon Lab Git/Github Workshop

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