Matthias Zepper's repositories
linux-portfolio
Personal portfolio website of theme Ubuntu 20.04, made using NEXT.js & tailwind CSS
nf-core-statistics
A Github Action to gather Github stats about an organization. Written by Harrison Hogg for Spotify Backstage and slightly adapted to nf-core.
whisper-dockerized
A Docker image of OpenAI's Whisper model for advanced speech recognition.
cal.com
Scheduling infrastructure for absolutely everyone.
gh-api-confine
A Github action step to query the remaining Github API limit and rescind or pause a workflow run.
Lecture-OmicsDataAnlysis
Introductionary lecture on genomics data analysis.
bamtofastq
Converts bam or cram files to fastq format and does quality control.
dds_cli
API to access Scilifelab Data Centre's delivery portal. On development
dds_web
A cloud-based system for the delivery of data from SciLifeLab Facilities to their users (e.g. research group).
gia
gia: Genomic Interval Arithmetic
gw
A fast browser and annotation tool for genomic sequencing data
imgpilot
Turn the draft into amazing artwork with the power of Real-Time Latent Consistency Model
modkit
A bioinformatics tool for working with modified bases
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
MultiQC_TestData
Test data for MultiQC. See https://github.com/ewels/MultiQC
Nextflow_withLabel_prio
A small Nextflow test pipeline to establish the selector priority for multiple withLabel selectors.
nf-core-website
Code and files for the main nf-core website.
ngisweden.se
Wordpress theme and plugins for ngisweden.se
paolos-awesome-pipeline
A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
paper-qa
LLM Chain for answering questions from documents with citations
rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
rust-lang-book
The Rust Programming Language
sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
seqinspector
QC pipeline to inspect your sequences
slidev-theme-penguin
A Penguin 🐧 theme for Slidev
stargazer
Your repo reached a stars milestone? Celebrate with a video of your stargazers!
tools
Python package with helper tools for the nf-core community.
twkit
BETA: Python implementation for automated pipeline launching through Tower CLI
umi-transfer
A Rust software to extract Unique Molecular Identifiers in FastQ files and embedd them into the ID of the corresponding reads.