Matrisome's repositories
MatrisomeAnalyzeR
An R package for ECM molecule annotation, classification, and analysis
matrisome-analyzer-v1_2016
This script analyzes proteomic datasets for ECM content according to matrisome divisions and categories proposed by Naba and collaborators.
matrisome-annotator-v1_2016
This script allows the annotation of ECM genes/proteins in datasets and annotates these genes/proteins according to matrisome divisions (core matrisome or matrisome-associated) and categories (ECM glycoproteins, collagens and proteoglycans, for core matrisome genes, ECM-affiliated, ECM regulators and secreted factors, for matrisome-associated genes) proposed by Naba and collaborators.
matrisome-PTM-mutations
Pan-cancer analysis of disruptive PTM mutations in the matrisome
MatrisomeDB2
Scripts used to build the new functionalities of MatrisomeDB
MatrixPromoterome.github.io
https://doi.org/10.1016/j.matbio.2022.06.003
pancancer-matrisome-mutations
Pan-cancer analysis of the genomic alterations and mutations of the matrisome
proteomics-metadata-standard
The Proteomics Experimental Design file format: Standard for experimental design annotation
sdrf-pipelines
A repository to convert SDRF proteomics files into pipelines config files
vitessce
Vitessce is a visual integration tool for exploration of spatial single-cell experiments.