MathijsSanders's repositories
AdditionalBAMStatistics
Source code for AdditionalBAMStatistics
annotateSniffles
Annotate Sniffles files using controls for filtering
validateSVIllumina
Determine whether SV is present in Illumina WGS data
overlapSnifflesPindel
Detect Sniffles annotated small deletions in Illumina WGS data.
validateStructuralVariants
Redetect structural variants determined from Illumina WGS data by BRASS in matched PacBio WGS data
SangerFilterScripts
Scripts for filtering variants specific for the Sanger system
ExtractSVChains
Extract fold-back inversion and fold-back inversion with small templated insertion chains from BRASS output
MMR
Scripts for the MMR manuscript
ComplexHeatmap
Make Complex Heatmaps
AnnotateBAMStatistics
Source code for AnnotateBAMStatistics
AdditionalBAMStatisticsSingularity
Singularity definition file for AdditionalBAMStatistics
AnnotateBRASS
Package for further annotation of BRASS output for filtering purposes.
mathijssanders.github.io
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AML-RoaMeR
Calculate RMR values for somatic mutations in AML