MarioStanke

Linear-Recurrent-Units-Tensorflow

Unofficial TensorFlow implementation of a Linear Recurrent Unit, proposed by Google Deepmind.

LRU-pytorch

Unofficial implementation of Linear Recurrent Units, by Deepmind, in Pytorch

minimal-LRU

Non official implementation of the Linear Recurrent Unit (LRU, Orvieto et al. 2023)

minDiffusion

Self-contained, minimalistic implementation of diffusion models with Pytorch.

xai_gan

BEND

Benchmarking DNA Language Models on Biologically Meaningful Tasks

sdsl-lite

Succinct Data Structure Library 2.0

taffy

This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files

BrowserPi

hyena-dna

Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena

Augustus

Genome annotation with AUGUSTUS

text-embedding

LLMs and embeddings for Uni GW texts

bark

🔊 Text-Prompted Generative Audio Model

chatgpt-retrieval-plugin

The ChatGPT Retrieval Plugin lets you easily find personal or work documents by asking questions in natural language.

KI-Block

Blockkurs Künstliche Intelligenz, Neuronale Netze, Deep Learning

google-research

Google Research

stringtie

Transcript assembly and quantification for RNA-Seq

Helixer

Using Deep Learning to predict gene annotations

GeneMark-ETP

GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology

BraiNN

Convolutional Neural Network for classifying sex from MRI

CGP-HMM

This is the code of my Master's thesis, with the title "Unsupervised Learning of a Hidden Markov Model of a Family of Gene Structures from Unaligned Genomic Sequences".

learnMSA

Learning and Aligning Large Protein Families (MSA-HMM)

alphafold

Open source code for AlphaFold.

ensembl-anno

MSAgen

Simple Python module to simulate a set of related DNA sequences

learntools

Tools and tests used in Kaggle Learn exercises

SmartApplianceEnabler

This gateway software turns existing devices into smart appliances.

GENESPACE

shap

A game theoretic approach to explain the output of any machine learning model.

xgboost

Scalable, Portable and Distributed Gradient Boosting (GBDT, GBRT or GBM) Library, for Python, R, Java, Scala, C++ and more. Runs on single machine, Hadoop, Spark, Dask, Flink and DataFlow