MarioStanke / GeneMark-ETP

GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology

GeneMark-ETP

Gene finding in eukaryotic genomes by GeneMark-ETP

Reference

GeneMark-ETP: Automatic Gene Finding in Eukaryotic Genomes in Consistence with Extrinsic Data
Tomas Bruna, Alexandre Lomsadze, Mark Borodovsky
publication in preparation
bioRxiv
Georgia Institute of Technology, Atlanta, Georgia, USA

Experiments

The repository with documentation of experiments, data, and results for the GeneMark-ETP project is available at https://github.com/gatech-genemark/GeneMark-ETP-exp

Instructions

Usage:

gmetp.pl --cores 32 --cfg input.cfg

Examples of input configuration files can be found at https://github.com/gatech-genemark/GeneMark-ETP-expi

Software license

GeneMark-ETP pipeline

GeneMark-ETP is distributed under Creative Commons Attribution NonCommercial ShareAlike 4.0 License. See the full text of the license.

Third-party tools

Third-party tools are in the folder "tools." These tools are distributed under the licensing terms of the respective license holders. For details, see the installation instructions and corresponding references.