Mariellapanag / pyEDFieeg

Useful functions for processing and extracting segments of iEEG from edf files

Home Page:https://mariellapanag.github.io/pyEDFieeg/

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pyEDFieeg

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Useful functions for navigating unstructured folders of EDF files, gathering useful information and extracting specified segments of data.

About

This package was motivated by the necessity of collecting and organising electroencephalographic (EEG) recordings from unstructured folders with European Data Format (EDF) files. Real data collected from patients with epilepsy often have several issues:

  1. EDF files might overlap, either in the entire time period that enclose or in parts of it
  2. Channels might be drop out along the recording period
  3. Channels might be added along the recording period
  4. Missing recordings might be present along the entire recording

Installation

The pip tool can be used to download the package

$ pip install git+https://github.com/Mariellapanag/pyEDFieeg.git

or

$ git clone https://github.com/Mariellapanag/pyEDFieeg.git

then the whole repository is being downloaded. The library root is located in the .\src folder.

Dependencies

For the root package

for running the processingUCLH scripts

[openpyxl = "^3.0.10"]

Documentation

The documentation can be found here [Sphinx documentation]

Acknowledgements

Resources, help and support was provided within the Computational Neurology, Neuroscience & Psychiatry Lab at Newcastle University.

The CNNP Lab is a group of interdisciplinary researchers working on Computational Neurology, Neuroscience, and Psychiatry (psychology). We apply theoretical and computational approaches to questions in the neuroscience domain. The lab members come from a colourful mix of backgrounds, ranging from computing, mathematics, statistics, and engineering to biology, psychology, neuroscience, and neurology.

References

License

Released under the MIT license.

About

Useful functions for processing and extracting segments of iEEG from edf files

https://mariellapanag.github.io/pyEDFieeg/

License:MIT License


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