Mara's repositories
sanbomics_scripts
scripts and notebooks from sanbomics
amazon-sagemaker-clarify
Fairness Aware Machine Learning. Bias detection and mitigation for datasets and models.
amino_acid_encoding_deep_learning_applications
The repository contains all the code for the paper amino acid encoding using deep learning application
catalog_of_requirements_for_ai_products
The purpose of the catalog is to help data science teams to collect all the requirements to consider while building a ML model and productionizing it.
Create_Populate_Database_mySQL
Creates a database with column information from a Genbank file and loads the data output from the functions in the repository No_Biopython_No_Problem (can be imported as a module).
docs
Documentation of the Snakemake-Workflows project
epitopepredict
Python package and command line tool for epitope prediction
ethereumbook
Mastering Ethereum, by Andreas M. Antonopoulos, Gavin Wood
my_msc_project
proline_conformation_prediction
No_Biopython_No_Problem
Extracting the data from the GenBank file with multiple gene entries without the use of Biopython
padua
Proteomic Data Analysis with Python (pandas, scikit-learn, numpy, scipy)
Perturbseq_GI
Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"
pride-inspector
PRIDE Inspector is a Java desktop application to visualise and Quality Assessment on Mass Spectrometry data and Proteomics
PythonProteomics
A collection of available Python tools for Proteomics analysis
scikit-learn-videos
Jupyter notebooks from the scikit-learn video series
shap
A game theoretic approach to explain the output of any machine learning model.
teaching
Material for courses I have taught/been involved in