Manik Garg's repositories
SystemsBiology2021_IntegrationPractical
Practical for "Systems biology: From large datasets to biological insight 2021" course at EMBL-EBI
advanced_python_2019_EBI
Advanced Python Course for PreDoc Training at the EBI
brew
🍺 The missing package manager for macOS
clustermq
R package to send function calls as jobs on LSF, SGE, Slurm, PBS, Torque, or each via SSH
ebits
R bioinformatics toolkit incubator
genstats
Statistics course for JHU Genomic Data Science Sequence
GRAMD1B-analysis
Analysis for GRAMD1B
irap
integrated RNA-seq Analysis Pipeline
ML_course
Machine Learning Course Fall 2016 (a.k.a. PCML)
pcml-project2
Repository for the second project in Machine Learning, EPFL 2016/2017.
pipeline-transcriptome-de
Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
python-data-science
Python3 teaching materials for data science (2 days)
rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
Thesis-SupplementaryMaterial
Supplementary figures and tables for my PhD thesis.