Maikuraky's repositories
alpa
Training and serving large-scale neural networks
alphaflow
AlphaFold Meets Flow Matching for Generating Protein Ensembles
binding-ddg-predictor
open source repository
chroma
A generative model for programmable protein design
DeepSpeed
DeepSpeed is a deep learning optimization library that makes distributed training and inference easy, efficient, and effective.
Distance-AF
Public version for Distance-AF
DockQ
DockQ is a single continuous quality measure for protein docked models based on the CAPRI evaluation protocol
esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
evo
DNA foundation modeling from molecular to genome scale
flash-attention
Fast and memory-efficient exact attention
genie
De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds
llama-recipes
Examples and recipes for Llama 2 model
molstar
A comprehensive macromolecular library
multiflow
Generative Flows on Discrete State-Spaces: Enabling Multimodal Flows with Applications to Protein Co-Design
OpenCRISPR
AI-generated gene editing systems
papers_for_protein_design_using_DL
List of papers about Proteins Design using Deep Learning
PepFlow
Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)
PLMSearch
PLMSearch enables accurate and fast homologous protein search with only sequences as input.
protpardelle
Diffusion-based all-atom protein generative model.
rcsb-molstar
RCSB PDB apps and props based on Mol*
rf_diffusion_all_atom
Public RFDiffusionAA repo
se3_diffusion
Implementation for SE(3) diffusion model with application to protein backbone generation
SecondaryStructureDraw
画蛋白二级结构图的新工具
tensor_parallel
Automatically split your PyTorch models on multiple GPUs for training & inference
torchkeras
Pytorch❤️ Keras 😋😋