MadhumitaSushil

SDAE

Stacked Denoising AutoEncoder

OncLLMExtraction

Expert-Curated Oncology Reports to Advance Language Model Inference

Biomedical_Clinical_LLMs

ADE_detection

ai-ml-ripperk

A high performance rule induction algorithm (RIPPERk).

awesome-machine-learning-interpretability

A curated list of awesome machine learning interpretability resources.

CliNER

Clinical Named Entity Recognition system (CliNER) is an open-source natural language processing system for named entity recognition in clinical text of electronic health records.

clinical_datasets

List of publicly-available clinical datasets

coral

interpretability-literature

rnn_expl_rules

anchor

Code for "High-Precision Model-Agnostic Explanations" paper

bio-lm

We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.

BreastCaPathClassification

breast cancer pathology classification with supervised and zero-shot methods

clicr

Machine reading comprehension on clinical case reports

code-status-annotations-mimic

Code status annotations for 1174 MIMIC-III discharge summaries

deeplearning4j

Deep Learning for Java, Scala & Clojure on Hadoop, Spark & GPUs

DeepLearningExamples

Deep Learning Examples

Excitement-Open-Platform

Open Source Platform for Recognizing Textual Entailments (RTE)

GetAhead2019

imp_vis

Interactive in-browser importance score visualizer tool for sequences

interpretable_decision_sets

language

Shared repository for open-sourced projects from the Google AI Language team.

MadhumitaSushil.github.io

Personal website

medspacy

Library for clinical NLP with spaCy.

models

Models and examples built with TensorFlow

rdocChallenge

Our approach to the CEGS N-GRID 2016 Shared Task in Clinical Natural Language Processing, about the detection of symptom severity.

sdoh_n2c2track2_ucsf_umcu

Code for the N2C2 SDOH challenge and a consequent article

transformers

🤗Transformers: State-of-the-art Natural Language Processing for Pytorch, TensorFlow, and JAX.