Matt Cannon's repositories
primerTree
PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs
MConsensus
Generate a consensus sequence for a given gene/organism
2022NCHCodingChallenge
Ryan's personal submission for the Matthew Cannon 2022 NCH Coding Challenge
2023CoderUpgrade
Materials for the Nationwide Children's 2023 Coder Upgrade, a single-cell analysis coding boot camp run by SCRGOT (the Single Cell Research Group for Omics Technologies).
chisel
CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links
DNAnexus_tools
Tools to use with DNAnexus
Informatics_challenge_2022-1
These are my answer's to Matt Cannon's Informatics Challenge
md5compare
Compare bulk file md5sums in a simple manner
OSHetero2021
Files supporting data analysis for the heterogeneity in osteosarcoma tissue tropism paper (Sanjana lead)
primerEvalDocker
files to create a docker image for the primer evaluation pipeline
python_intro_2024
Materials for the intro to python 2024 workshop
rrrSingleCellUtils
Single cell analysis utility functions for the Ryan Roberts lab
singularity-rstudio
RStudio Server in a Singularity container
TransDecoder
TransDecoder source