MRCIEU / ieugwasr

R interface to the IEU GWAS database API

https://mrcieu.github.io/ieugwasr/

MRCIEU/ieugwasr Issues

A bug in ieugwasr::ld_matrix_local
Updated 2 months ago6
user() giving me an error after the authentication
Closed 2 months ago11
`ieugwasr::check_access_token()`:
Updated 2 months ago3
Anyone use this to calculate LD matrix for coloc-susie? Is there a bug in ld_matrix_local?
Updated 2 months ago
ieugwasr：：get_access_token()
Closed 2 months ago
ieugwasr：：get_access_token()
Closed 2 months ago
Error message when there is no result for tophits
Closed 2 months ago4
New API interface, part of SNP extraction is missing
Updated 2 months ago
The possible difference between local clumping and server clumping
Updated 2 months ago
JWT authentication
Closed 2 months ago
Problem during 0.1.8 install: zzz.R:53:32: unexpected input 53: o <- lapply(b, \
Closed 2 months ago2
Preparing for CRAN
Closed 2 months ago11
Issue with available_outcomes() in ieugwasr Package: Error Accessing status_code
Closed 3 months ago2
gwasglue2 output and new ldscores functions
Closed 3 months ago
Error in loading ‘ieugwasr 0.1.8’
Closed 3 months ago
Help with .onLoad Error in ieugwasr Package when Calling available_outcomes()
Closed 3 months ago1
some errors
Updated 3 months ago2
phewas function give inconsistent results
Updated 3 months ago
local ld_clump:Warning: cannot open file 'C:\Users\Zheng\AppData\Local\Temp\RtmpqWMUyA\file65d825722a42.clumped': No such file or directoryError in file(file, "rt") : cannot open the connection
Updated 4 months ago21
Can I use ieugwasr_to_coloc( ) without samplesize?
Updated 4 months ago1
ld_clump error: Error in file(file, "rt") : cannot open the connection
Updated 4 months ago3
Argument list too long
Closed 4 months ago
ld_clump error
Updated 5 months ago3
harmonise_ld_dat not working properly
Updated 5 months ago
Clump-data Error: Empty reply from server
Updated 6 months ago
Bug??? Confusion about ld_clump vs ld_clump_local
Updated 7 months ago
Error: Could not authenticate via any gargle cred function
Closed 8 months ago3
Adding memory argument for ld_clump_local
Updated 8 months ago
ld_matrix and ld_matrix_local give different results
Updated 8 months ago1
P-values less than 300 bork the results when clumping
Updated 9 months ago1
Error: Warning: No significant --clump results. Skipping.
Closed a year ago2
Clumping stopping without error potentially due to tempfile()
Updated a year ago
update ld_matrix_local to create variant ID and standardise
Updated a year ago1
bug in running ld_clump_local on MacOS
Updated a year ago1
Server code: 502; Server is possibly experiencing traffic, trying again...
Updated a year ago
Server code: 503; Server is possibly experiencing traffic, trying again
Updated 2 years ago
tophits and extract_instruments fail to find some variants
Updated 2 years ago2
ieugwasr::ld_matrix cannot extract LD matrix
Updated 2 years ago4
Server code: 503; Server is possibly experiencing traffic. Failed to retrieve results from server.
Updated 2 years ago
error reporting: Error: Could not authenticate via any gargle cred function
Updated 2 years ago
Is it possible to extract only a list of variants present in a given study?
Updated 2 years ago
Wrong values from variants_rsid() when querying with vectors n>1
Updated 2 years ago1
ld_clump may cann't retain the snp witg lowest p-value
Updated 2 years ago
How were the ld scores obtained through afl2_list generated?
Updated 3 years ago
Make a separate batch for results from Orru et al.
Closed 3 years ago1
rs1309301702
Updated 3 years ago
explanation of variant metadata fields?
Updated 3 years ago
Error: Failed to install 'ieugwasr' from GitHub:
Updated 3 years ago
How to just pull full summary statistics? E.g. as input for LDSC
Closed 3 years ago1
Inconsistent beta, se and p-value
Updated 4 years ago