MRCIEU / gwasvcf

Reading, querying and writing GWAS summary data in VCF format

https://mrcieu.github.io/gwasvcf

MRCIEU/gwasvcf Issues

Reference datasets not downloadable
Updated 5 months ago
LD clumping
Updated 6 months ago2
LD proxy error
Updated 7 months ago2
Error in all_dims[, 1L] : incorrect number of dimensions
Updated 7 months ago3
convert to gwasglue2 summaryset inside gwasvcf package
Closed 9 months ago
Query_gwas raises defunct error with tibble v3
Updated 10 months ago3
Question: How is the file http://fileserve.mrcieu.ac.uk/vcf/1kg_v3_nomult.vcf.gz made?
Updated 10 months ago
Incorrect dimensions error in proxy_match function
Updated a year ago
error in LD proxies
Updated 2 years ago
cis-eQTL summary statistics application
Updated 2 years ago2
Using create_vcf: landing this error below and can not find way around
Closed 2 years ago1
create_vcf does not follow the GWAS VCF format specification?
Updated 3 years ago3
Git does not seem to be installed on your system
Updated 3 years ago1
bug report
Updated 3 years ago
you can remove bioc3.11 entries from Remotes in DESCRIPTION
Updated 3 years ago
Tags or releases?
Closed 4 years ago1
Convert tibble to vcf
Closed 5 years ago1
Convert vcf to tibble
Closed 5 years ago1
Documentation
Updated 5 years ago
Improve test coverage
Updated 5 years ago
Allow proxies to work with granges list
Updated 5 years ago
harmonise between query.R and extract.R
Closed 5 years ago1
Generalise the ld_proxy function to not depend on vcf?
Closed 5 years ago1
Querying functions to be finalised
Closed 5 years ago1