MRCIEU / gwas-vcf-specification

Specification for the GWAS-VCF format (manuscript in preparation)

MRCIEU/gwas-vcf-specification Issues

Multi sample VCF advice
Updated 10 months ago
Clarify ES as a β-like value
Updated 2 years ago
Make requirement for non-duplicated variants explicit
Updated 2 years ago
gwas2vcf JSON column names to VCF "columns"
Updated 3 years ago
add VCF field for clumped top hits
Updated 3 years ago
Convert OR and 95%CI to ES and SE
Closed 3 years ago2
repeating rows/SNPs in gwas
Closed 3 years ago1
How to perform CAUSE with GWAS-VCF files?
Closed 4 years ago2
Performance test TSV vs VCF
Closed 4 years ago1
Make sure differences between case.control & continuous are clear
Closed 4 years ago
replace study with trait
Closed 4 years ago
make explicit that multiple traits can be stored in the VCF
Closed 4 years ago
should provide WDL pipeline and component containers too
Closed 5 years ago2
list tools for harmonising GWAS summary stats and working with VCF files
Closed 5 years ago1