Mackenzie Mathis's repositories
3D-DeepLabCut-Cheetah
3D Markerless Body Motion Capture for the Cheetah
MotionMapper
Sample implementation of the MotionMapper behavioral analysis algorithms
MotorLearningModel
Contains Code used in Mathis et al. 2017, DOI: http://dx.doi.org/10.1016/j.neuron.2017.02.049
DeepLabCut-Workshop-Materials
Workshop material for using DeepLabCut
scanreader
Python TIFF Stack Reader for ScanImage 5 scans (including multiROI).
awesome-ai-residency
List of AI Residency Programs
awesome-neural-geometry
A curated collection of resources and research related to the geometry of representations in the brain, deep networks, and beyond
BUCTD
Official Open Source code for "Rethinking pose estimation in crowds: overcoming the detection information-bottleneck and ambiguity"
CellSeg3d
a napari plug-in for direct 3D cell segmentation on cleared tissue -- taking you through training, inference, and review of masks
datajoint-python
Relational data pipelines for the science lab
deepgraphpose
DeepGraphPose
DeepLabCut
Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
deeplabcut-1
A Bonsai interface for real-time markerless pose estimation using DeepLabCut
DeepLabCut-cookbook
Scipy Cookbook
DeepLabCut-core
Headless DeepLabCut (no GUI support)
DeepLabCut-live-GUI
GUI to run DeepLabCut on live video feed
DeepLabCut_maDLC_DemoData
Example DeepLabCut projects
DLC2Kinematics
a module for kinematic analysis of deeplabcut outputs
Docker4DeepLabCut2.0
Docker container for running DeepLabCut2.0 (linux support only)
LINdoscope2023
Notebooks and code for the 2023 EMBO course on imaging and data analysis
openscope_databook
OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁🧠🔬🖥️📈
stylize-datasets
A script that applies the AdaIN style transfer method to arbitrary datasets
swiftascmaps
Taylor Swift-inspired color maps
VAME
Variational Animal Motion Embedding