MLHale / funset-frontend

Front-end web code supporting the FunSet Viz project.

FunSet Enrichment Visualization frontend

The FunSet webserver performs Gene Ontology (GO) enrichment analysis, identifying GO terms that are statistically overrepresented in a target set with respect to a background set. The enriched terms are displayed in a 2D plot that captures the semantic similarity between terms, with the option to cluster the terms and identify a representative term for each cluster. FunSet can be used interactively or programmatically, and allows users to download the enrichment results both in tabular form and in graphical form as SVG files or in data format as JSON.

This is the client-side portion of FunSet.

Prerequisites

You will need the following things properly installed on your computer.

• Git
• Node.js (with npm)
• Ember CLI
• Google Chrome

Installation

• git clone <repository-url> this repository
• cd <repository-url>
• npm install

Running / Development

• ember serve
• Visit your app at http://localhost:4200.
• Visit your tests at http://localhost:4200/tests.

Code Generators

Make use of the many generators for code, try ember help generate for more details

Running Tests

• ember test
• ember test --server

Building

• ember build (development)
• ember build --environment production (production)

Deploying

Specify what it takes to deploy your app.

Further Reading / Useful Links

• ember.js
• ember-cli
• Development Browser Extensions
  • ember inspector for chrome
  • ember inspector for firefox

License

Funset is a web-based BIOI tool for visualizing genetic pathway information. Copyright (C) 2017 Matthew L. Hale, Dario Ghersi, Ishwor Thapa

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/.