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MD Anderson Cancer Center - Dept. of Bioinformatics and Computational Biology (MD-Anderson-Bioinformatics)

MD Anderson Cancer Center - Dept. of Bioinformatics and Computational Biology

MD-Anderson-Bioinformatics

Geek Repo

Tools and projects of BCB at MD Anderson Cancer Center

Location:The University of Texas MD Anderson Cancer Center

Home Page:https://www.mdanderson.org/research/departments-labs-institutes/departments-divisions/bioinformatics-and-computational-biology.html

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MD Anderson Cancer Center - Dept. of Bioinformatics and Computational Biology's repositories

MBatch

Superseded by https://github.com/MD-Anderson-Bioinformatics/BatchEffectsPackage

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SpliceSeq

A tool for investigating alternative mRNA splicing in next generation mRNA sequence data.

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GeneSurvey

Gene Survey R package - take TCGA Standardized Data and make gene level cross-disease and sometimes cross platform comparisons and evaluations simpler to perform

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ReadMatrixRcpp

R package wrapped around C++ used to quickly read very large "platform" level matrices from within a ZIP archive

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SAMMI

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GSAccess

The GSAccess application provides a Java link between the data and the Gene Survey R package

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rstudio-ngchm

rstudio with preinstalled NGCHM R library

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GenePattern_NGCHM_BasicBuilder

A GenePattern module to build NGCHM in GenePattern notebook

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Video-Narrator

Use google text-to-speech to narrate an audio track for a video

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