MD-Anderson-Bioinformatics / NGCHMSupportFiles

Support files for NGCHM-R package

NGCHM Support Files

This package contains support files used by NGCHM R package functions chmExportToFile(), chmExportToHTML(), and chmExportToPDF().

The version number in this package corresponds to the version number of the NG-CHM viewer project.

Installation

This package can be installed from the MD-Anderson-Bioinformatics R-Universe repository.

install.packages("NGCHMSupportFiles", repos = c("https://md-anderson-bioinformatics.r-universe.dev", "https://cran.r-project.org"))

Included files

1. ShaidyMapGen.jar: compiled java code used to export an NG-CHM to a file

   This jar file was compiled for java 11 by running ant -f build_shaidyRmapgen.xml (ant build script is in the NG-CHM viewer project).

   When this package is loaded, the SHAIDYMAPGEN environment variable is set to the path of the ShaidyMapGen.jar file in this package.

2. ngchmWidget-min.js: a javascript module required for embedding an NG-CHM into a webpage

   This file was obtained by running ant -f build_ngchmApp.xml (ant build script is in the NG-CHM viewer project).

   When this package is loaded, the NGCHMWIDGETPATH environment variable is set to the path of the ngchmWidget-min.js file in this package.