MClarke1991

Awesome-Interpretability-in-Large-Language-Models

This repository collects all relevant resources about interpretability in LLMs

refusal_direction

Code and results accompanying the paper "Refusal in Language Models Is Mediated by a Single Direction".

MultiDimensionalFeatures

Code for reproducing our paper "Not All Language Model Features Are Linear"

sae

Sparse autoencoders

neuroscope

Neuroscope:An Explainable AI Toolbox for Semantic Segmentation and Image Classification of Convolutional Neural Nets

transcoder_circuits

sae_vis

Create feature-centric and prompt-centric visualizations for sparse autoencoders (like those from Anthropic's published research).

dictionary_learning

feature-circuits

PERCEPTION

Utilizing single-cell omics from patients tumor to predict response and resistance.

transformer-debugger

alphabetical_probe

Experimental code which trains 26 linear probes to detect the presence of alphabetic letters in GPT-J token strings, given their embeddings. Exploring the resulting vector arithmetic and its impact on GPT-J spelling abilities

ARENA_3.0

cellnopt

Tool for training of logic models of signalling networks using prior knowledge networks and perturbation data.

pytest-action

:octocat: GitHub Action to run pytest with GitHub Job Summaries support :snake: :rocket:

Melanoma-LC

Network model .json file for the Langerhans Cell (LC), Melanoma and combined models first described in Howell, Davies et al., Science Advances 2023.

MutationOrder

MutationOrder is a tool to explore how the order in which mutations are acquired in an evolving cancer is constrained by the change in cell phenotypes that these mutations cause.

ASCETIC

ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal patterns involving alternations in driver genes from cancer genomics data. Manuscript published at: https://www.nature.com/articles/s41467-023-41670-3

BI-BE-CS-183-2023

Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023

QGEN_Lua

Competing Genetic Algorithm to find profitable Trading Strategies on a financial market

gut-COVID

Github repository for the Gut-Covid project

nanoChatGPT

A crude RLHF layer on top of nanoGPT with Gumbel-Softmax trick

org-novelist

Org Novelist is a system for writing novel-length fiction using Emacs Org mode.

alpaca.cpp

Locally run an Instruction-Tuned Chat-Style LLM

SCEVAN

R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of malignant cells, identifies subclonal structures and analyses the specific and shared alterations of each subpopulation.

ChatGPT3-Free-Prompt-List

A free guide for learning to create ChatGPT3 Prompts

biocypher

A unifying framework for biomedical research knowledge graphs

tumor-prevention-rat-scRNAseq

Code and materials to support genomic analyses and reproduce results from the paper "Breast cancer prevention by short-term inhibition of TGFB signaling", published in Nature Communications in December 2022.

codegrip

Reshaping and navigation commands for R code

KPNN

Knowledge-primed neural networks