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Matthew A. Clarke (MClarke1991)

MClarke1991

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Company:London Institute for Safe AI

Location:London

Home Page:https://mclarke1991.github.io/

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jfisher-lab

Matthew A. Clarke's starred repositories

Z3Tutorials

A set of F# scripts demonstrating how to use Z3

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Rclean

:warning: ARCHIVED :warning: Isolate essential code to re-produce specific results.

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Cancer_cell_evolution

tugHall: a simulator of cancer cell evolution based on the hallmarks of cancer, linked to the mutational states of tumor-related genes. This is a script in R to simulate the cancer cell evolution in the framework of Hallmarks model proposed by prof. Mamoru Kato.

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covid-19-bh20

COVID-19 Biohackathon April 5-11 2020

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covid19_crowd_library

COVID-19 Crowd Generated Gene and Drug Set Library

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covid-uk

Scenario analyses for COVID-19 outbreak in the United Kingdom

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nCoV2019

Location for summaries and analysis of data related to n-CoV 2019, first reported in Wuhan, China

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COVID-19

Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE

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prismatic

color manipulation R package Simply and Tidy

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hemelb

HemeLB now lives at https://github.com/hemelb-codes/hemelb

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math-and-ml-notes

Books, papers and links to latest research in ML/AI

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tools

Short scripts for various bioinformatics applications

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NYU-DLSP20

NYU Deep Learning Spring 2020

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time-series-forecasting

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text-mining

Text Mining with Tidy Data Principles ✨ 📖✨

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build-tidy-tools

Materials for the Building Tidy Tools workshop at rstudio::conf 2020

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dataviz

Course materials for Kieran Healy's rstudio::conf 2020 data visualization workshop

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dm-haiku

JAX-based neural network library

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rlax

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trax

Trax — Deep Learning with Clear Code and Speed

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scientific_python_notebooks

Introduction to scientific Python as presented at several schools, workshops and conferences

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Triagen

Triaging of genetic variants in cancer

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VAGrENT

A toolset for comparing genomic variants to reference genome annotation to identify potential biological consequences

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battenberg

Battenberg R package for subclonal copynumber estimation

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row-oriented-workflows

Row-oriented workflows in R with the tidyverse

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emacs.d

An Emacs configuration bundle with batteries included

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origami.el

A folding minor mode for Emacs

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trRosetta

A package to predict protein inter-residue geometries from sequence data

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Parsr

Transforms PDF, Documents and Images into Enriched Structured Data

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fishplot

Create timecourse "fish plots" that show changes in the clonal architecture of tumors

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