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Mitchell Bekritsky (MBekritsky)

MBekritsky

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Company:Illumina

Location:London, England

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Mitchell Bekritsky's starred repositories

VerifyBamID

VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.

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webin-xml

Webin XML and JSON API.

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gvcfgenotyper

A utility for merging and genotyping Illumina-style GVCFs.

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paragraph

Graph realignment tools for structural variants

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Polaris

Data and information about the Polaris study

Stargazers:52Issues:0Issues:0

shields

Concise, consistent, and legible badges in SVG and raster format

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lancet

Microassembly based somatic variant caller for NGS data

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luigi

Luigi is a Python module that helps you build complex pipelines of batch jobs. It handles dependency resolution, workflow management, visualization etc. It also comes with Hadoop support built in.

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markdown-here

Google Chrome, Firefox, and Thunderbird extension that lets you write email in Markdown and render it before sending.

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awesome-pipeline

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

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hap.py

Haplotype VCF comparison tools

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pyBigWig

A python extension for quick access to bigWig and bigBed files

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repeatseq

Accurate microsatellite genotypes from high-throughput resequencing data

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