Michael J.'s repositories
amniotic_fluid
Analysis of Amniotic fluid
COVIRT19_microbial
This repo is the hub for version control of the COVIRT19 microbial subgroup code on the TACC cluster
hybrid_metagenomics
An idea that I am working on that intergrate 16S and WGS metagenomic sequencing
jupyter_scipy_cc2020
test dockerhub builds for container camp
microbiome_bioinformatics_2020_tutorial_series
this github contains all of the scripts and slides presented during the 2020 microbiome bioinformatics tutorial series for the SMART program participants.
tensorflow_basecaller
An attempt at using machine learning to improve the accuracy of basecalling from nanopore sequencing
terminal_c_replays
a list of replays from terminal_c
amplicon-seq-dada2
Snakemake pipeline for amplicon sequencing using dada2
An-Introduction-To-Applied-Bioinformatics
Interactive lessons in bioinformatics.
bioconda-recipes
Conda recipes for the bioconda channel.
bowtie2_samtools
Dockerfile for bowtie2 v 2.4.1 and samtools 1.10 running on ubuntu 20.04
docker_images
repository for docker images that are hosted on docker hub
hello-world
this is my first repository on github
Lab_meeting
Aagaard Lab meeting scripts for Intro to Bioinformatics
lmatz
Matz_et_al_T2D_AD
microbiome_binder_repo
test microbiome tutorial series binder
NCBI_Hackathon_JOchum_Repo
place for me to push stuff for the hackathon
Type_1_Diabetes_public
Maternal Type 1 Diabetes public repository for sharing Rscripts and data analyses