Huimin Zhang's repositories
R_pipeline_after_Qiime2
A fully tutorial after qiime2 based content in most papers
microbiomeMarker
R package for microbiome biomarker discovery
alluvial
:exclamation: This is a read-only mirror of the CRAN R package repository. alluvial — Alluvial Diagrams. Homepage: https://github.com/mbojan/alluvial Report bugs for this package: https://github.com/mbojan/alluvial/issues
CellTalkDB
A manually curated database of literature-supported ligand-receptor interactions in human and mouse
circlize
Circular visualization in R
complex-upset
A library for creating complex UpSet plots with ggplot2 geoms
d3-sankey-diagram
Sankey diagram for d3
EasyStat
EasyStat
FEAST
Fast expectation maximization for microbial source tracking
ggClusterNet
Microbial ecological network visualization clustering
ggcor
Extended tools for correlation analysis and visualization.
ggpattern
ggplot geoms with pattern fills
ggpicrust2
Make Picrust2 Output Analysis and Visualization Easier
ggpie
ggpie - A ggplot2 extension to create pie, donut and rose pie plot
ggpmisc-1
R package ggpmisc is an extension to ggplot2 and the Grammar of Graphics
glottoTrees
Preparation of phylogenetic trees by adapting resources from glottolog.com
GUniFrac
:exclamation: This is a read-only mirror of the CRAN R package repository. GUniFrac — Generalized UniFrac Distances, Distance-Based Multivariate Methods and Feature-Based Univariate Methods for Microbiome Data Analysis
Maaslin2
MaAsLin2: Microbiome Multivariate Association with Linear Models
mapchina
R Package of Geospatial Shapefile of China Administrative Divisions to the County/District-Level.
metacoder
Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data
metaWRAP
MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
MultiOmicAnalysis
Genome-centric Multi-omic Analysis Workflow for the Marinimicrobia paper
pheatmap
Pretty heatmaps
psych
:exclamation: This is a read-only mirror of the CRAN R package repository. psych — Procedures for Psychological, Psychometric, and Personality Research. Homepage: https://personality-project.org/r/psych/ https://personality-project.org/r/psych-manual.pdf
rstatix
Pipe-friendly Framework for Basic Statistical Tests in R
Vennerable
Vennerable provides Venn diagrams in R. It displays Venn and Euler diagrams for up to 9 different sets and using a variety of geometries. It allows the display of area-weighted Venn diagrams and allows fine graphical control over the result.