A Streamlit component for the display of coarse-grained DNA/RNA 3D models. It is a wrapper around the oxdna-viewer.
This component requires access to write files to the temporary directory.
pip install st_oxview
Look at the example for a streamlit Web App:
You can make a empty oxview fram and drag and drop the files to the frame.
import streamlit as st
from st_oxview import oxview_from_text
success = oxview_from_file()
Just drag and drop the files to the frame.
import streamlit as st
from st_oxview import oxview_from_file
success = oxview_from_file(configuration=path_to_conf, # path to the configuration file
topology=path_to_topo, # path to the topology file
forces=None, # path to the forces file
pdb=None, # path to the pdb file
js_script=None, # path to the javascript script file
width='99%', # width of the viewer frame
height='500', # height of the viewer frame
key=None) # streamlit component key
import streamlit as st
from st_oxview import oxview_from_text
with open("configuration.dat", "r") as f:
conf_text = f.read()
with open("topology.top", "r") as f:
topo_text = f.read()
success = oxview_from_file(configuration=conf_text, # text of the configuration file
topology=topo_text, # text of the topology file
forces=None, # text of the forces file
pdb=None, # text of the pdb file
js_script=None, # text of the javascript script file
width='99%', # width of the viewer frame
height='500', # height of the viewer frame
key=None) # streamlit component key
The functions return a boolean value indicating if the program was able to write and read the files.
Please include this citation if the OxView Component is used in an academic study:
Lucandia. Lucandia/st_oxview; Zenodo, 2024. https://zenodo.org/doi/10.5281/zenodo.12515559.
Code is licensed under the GNU General Public License v3.0 (GPL-3.0)