How-to examples that publish HTML files with code and output. Requires the Core Tools repository. The help examples focus on the CANlab’s interactive object-oriented tools.
Running the examples also serves as a preliminary unit testing frame for the CANlab tools.
Please document errors by posting issues on the CANlab Github page.
Overview ————————————————————————————
overview_fmri_data_object overview_statistic_image_object overview_region_object overview_fmridisplay_object
Visualization ————————————————————————————
plot_montage_of_slices plot_montage_of_multiple_maps plot_blobs_on_3d_surface plot_relationships_between_two_images receiver_operating_characteristic_plot
Data manipulation ————————————————————————————
extract_data_from_regions_of_interest
make_a_group_average_anatomical_underlay_image
convert_a_statistic_image_to_region_object convert_a_statistic_image_to_fmri_data_object
Quality control ———————————————————————————— basic_fmri_data_plot
Analysis ———————————————————————————— parcellate_regions draw_regions_of_interest choose_regions_of_interest_from_atlas
voxelwise_t_test voxelwise_regression
threshold_and_display_a_brain_map
multivariate_prediction_of_a_binary_outcome multivariate_prediction_of_a_continuous_outcome
bootstrap_a_multivariate_predictive_map permutation_test_on_multivariate_predictive_map