Beast code in Giters

LorenzLamm's starred repositories

surface_morphometrics

Morphometrics for Membrane Surfaces Segmented from Cryo-ET or other volumetric imaging.

Language:PythonGPL-3.01800

diffusion-net

Pytorch implementation of DiffusionNet for fast and robust learning on 3D surfaces like meshes or point clouds.

Language:PythonMIT39800

potpourri3d

An invigorating blend of 3D geometry tools in Python.

Language:PythonMIT40700

membranorama

A tool for creating and analyzing panoramic views of biological membranes in electron tomograms.

Language:C#GPL-3.01400

pyacvd

Python implementation of surface mesh resampling algorithm ACVD

Language:CythonMIT16000

morphospaces

A library for creating and exploring morphospaces

Language:PythonBSD-3-Clause200

libtilt

Image processing for cryo-electron microscopy in PyTorch

Language:PythonNOASSERTION1400

membrain-seg

membrane segmentation in 3D for cryo-ET

Language:PythonNOASSERTION4700

cryoCARE_pip

PIP package of cryoCARE

Language:PythonBSD-3-Clause2500

lucyd-deconvolution

A Feature-Driven Richardson-Lucy Deconvolution Network

Language:Python1200

HistoBistro

Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)

Language:Jupyter NotebookMIT5800

polnet

Generates synthetic datasets for Cryo-Electron Tomography

Language:PythonNOASSERTION1600

cryotomosim_CTS

cryo-EM tomogram simulator

Language:MATLABNOASSERTION1800

colabseg

Jupyter-based tool for membrane segmentation manipulation

Language:Jupyter NotebookApache-2.0800

Cell_ACDC

A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data

Language:PythonBSD-3-Clause12100

master-thesis

Denoising and segmentation networks for cryoET based on U-net architecture implemented in Pytorch

Language:Jupyter Notebook200