LiorZ's repositories
alphafold2
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
BioNavi-NP
Biosynthesis Navigator for Natural Products
BioPython-A3MIO
A3M/A2M support for BioPython
classification_models
Classification models trained on ImageNet. Keras.
deep-learning-project-template
Pytorch Lightning code guideline for conferences
deeplearning-biology
A list of deep learning implementations in biology
deepmind-research
This repository contains implementations and illustrative code to accompany DeepMind publications
esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
Mind-Expanding-Books
:books: Books that will blow your mind
paper-a-day
This is a repo for tracking my daily paper reading habit
perceiver-ar-pytorch
Implementation of Perceiver AR, Deepmind's new long-context attention network based on Perceiver architecture, in Pytorch
protein_generator
Joint sequence and structure generation with RoseTTAFold sequence space diffusion
protein_scoring
Generating and scoring novel enzyme sequences with a variety of models and metrics
ProteinMPNN
Code for the ProteinMPNN paper
proteinnet
Standardized data set for machine learning of protein structure
seminal-deep-learning-biology
Seminal Deep Learning papers in biology and biomedicine
Terpene-Profile-Parser-for-Cannabis-Strains
Parser and database to index the terpene profile of different strains of Cannabis from online databases
the-bread-code
Learn how to master the art of baking the programmer way.
todo-list-python
A simple To Do List with Python and Flask Framework
tr-rosetta-pytorch
Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design