LingyiC / CASCC

CASCC: A co-expression assisted single-cell RNA-seq data clustering method

CASCC: A co-expression assisted single-cell RNA-seq data clustering method

CASCC, a clustering method designed to improve biological accuracy using gene co-expression features identified using an unsupervised adaptive attractor algorithm.

The users can refer to our published manuscript, available at this link, for a detailed description of the method.

Installation

require(devtools)
remotes::install_version("Seurat", "4.3.0") # dependency
install_github("weiyi-bitw/cafr") # dependency
install_github("LingyiC/CASCC")
CASCC::checkDependencies() 

Tutorial

Vignette: https://rpubs.com/Lingyi/CASCC

Benchmarking

https://github.com/LingyiC/CASCC_benchmark