Lindsey (Lian Chee Foong)'s repositories
WGCNA_tutorial
A step-by-step tutorial for Weighted correlation network analysis (WGCNA)
How-to-analyze-GEO-microarray-data
GSE analysis for microarray data, for the tutorial as shown in https://www.youtube.com/watch?v=JQ24T9fpXvg&t=947s
Analysing-10X-ScRNA-data-Wang-et-al-2020-Nat-Commun-
I redo the ScRNA analysis in the paper of Wang et al 2020, Nat Comm. Here's my modified script for Helen He Zhu github (https://github.com/HelenHeZhu/StemCell)
Yu2021NaturePlants
Scripts for WGCNA network analysis and correlation with microbial taxonomy traits
scRNAseq-analysis-walkthrough-Reproducing-analysis-of-Karthaus-et-al-Science-2020
Using non-negative matrix factorization (NMF), graph-based clustering, and XGBoost machine learning, we analyze time-series samples and identify cell types for each cluster. Discover how NMF uncovers patterns, graph clustering reveals relationships, and XGBoost predicts and classifies.