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Linda Studer (LindaSt)

LindaSt

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Linda Studer's starred repositories

CellViT

CellViT: Vision Transformers for Precise Cell Segmentation and Classification

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Histopathology-Datasets

Ressources of histopathology datasets

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hi-ml

HI-ML toolbox for deep learning for medical imaging and Azure integration

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bioicons

A library of free open source icons for science illustrations in biology and chemistry

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valis

Virtual Alignment of pathoLogy Image Series

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Loss-Functions-For-Semantic-Segmentation

My own implementation for some sort of loss functions that have been used for segmentation task.

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AMIGO

This is the pytorch\DGL implementation of the AMIGO paper.

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deepops-slurmjob

Package for starting slurm interactive sessions via your local CLI.

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slidl

A Python library of pre- and post-processing tools for applying deep learning to whole-slide images

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torchvahadane

Gpu accelerated vahadane stain normalization for Digital Pathology workflows.

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cerberus

One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification

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iguana

Interpretable Gland-Graph Networks

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internet-explorer

Internet Explorer explores the web in a self-supervised manner to progressively find relevant examples that improve performance on a desired target dataset.

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Self-Supervised-ViT-Path

Self-Supervised Vision Transformers Learn Visual Concepts in Histopathology (LMRL Workshop, NeurIPS 2021)

Language:Jupyter NotebookLicense:GPL-3.0Stargazers:137Issues:0Issues:0

dino

PyTorch code for Vision Transformers training with the Self-Supervised learning method DINO

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training-collection

Collection of bioinformatics training materials

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DIVA-DAF

Repository for the deep-learning framework DIVA-DAF which is build with historical document image analysis in mind.

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GraphCL

[NeurIPS 2020] "Graph Contrastive Learning with Augmentations" by Yuning You, Tianlong Chen, Yongduo Sui, Ting Chen, Zhangyang Wang, Yang Shen

Language:PythonLicense:MITStargazers:548Issues:0Issues:0

optimate

A collection of libraries to optimise AI model performances

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GraphGym

Platform for designing and evaluating Graph Neural Networks (GNN)

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BachelorThesis

This repository contains my bachelor thesis for my computer science studies at University of Fribourg.

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tiffslide

TiffSlide - cloud native openslide-python replacement based on tifffile

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wsic

Whole Slide image (WSI) conversion for brightfield histology images

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tiatoolbox

Computational Pathology Toolbox developed by TIA Centre, University of Warwick.

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pathml

A Python library for deep learning on whole-slide images

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gizeh

Simple Vector Graphics for Python

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wsidicomizer

Python library for converting WSI files to DICOM

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opentile

Python library for reading tiles from wsi tiff-files.

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DIG

A library for graph deep learning research

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ImPartial

Interactive deep learning whole-cell segmentation and thresholding using partial annotations

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