LiangZhao21

champ-r

🐶 Yet another League of Legends helper

NGS-pipeline

By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline

In-depth-NGS-Data-Analysis-Course

maftools

Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.

TCGAmutations

R data package for pre-compiled somatic mutations from TCGA cohorts (from Broad Firehose and TCGA MC3 Project)

ICI-impaired-by-Sex

Code for paper

neoantigen_validation

tumor-immunogenicity-score

TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020

TCGA_BRCA

immunedeconv

A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods

RNAseqDB

ActmiR

GLNMDA

GLNMDA: A Novel Method for MiRNA-Disease Association Prediction based on Global Linear Neighborhoods

MCLPMDA

MCLPMDA: A novel method for miRNA-disease association prediction based on Matrix Completion and Label Propagation

DeepCC

DeepCC: a novel deep learning-based framework for cancer molecular subtype classification

msg

:book: 现代统计图形（人民邮电出版社出版） Modern Statistical Graphics

PathME

Clustering-Day-6

BioForum2019-TIGS-poster

A poster showing TIGS project at BioForum2019, ShanghaiTech University

gggenes

➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

reviews

Writing reviews of academic papers

clinical-medicine-notes

Notes in markdown for clinical medicine (mainly in Chinese)

ImmuneSubtypeClassifier

An R package for classification of immune subtypes, in cancer, using gene expression data.

Clustering-TCGAFiveCancerTypes

Code to Reproduce results in "Integrate Multi-omic Data Using Affinity Network Fusion (ANF) for Cancer Patient Clustering"

Glioblastoma

MCGN-MS

Multicellular gene network analysis identifies a macrophage-related gene signature predictive of therapeutic response and prognosis of gliomas

gbm_immune_validation

Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors

GBMatch

Code and metadata for glioblastoma matched analysis

Cancer_notes

A continually expanding collection of cancer genomics notes and data