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Liang Ma (LiangMa2017)

LiangMa2017

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Company:UT Health San Antonio

Location:San Antonio

Home Page:https://directory.uthscsa.edu/academics/profile/mal1

Twitter:@LiangMa2017

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Liang Ma's starred repositories

data-science-ipython-notebooks

Data science Python notebooks: Deep learning (TensorFlow, Theano, Caffe, Keras), scikit-learn, Kaggle, big data (Spark, Hadoop MapReduce, HDFS), matplotlib, pandas, NumPy, SciPy, Python essentials, AWS, and various command lines.

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gganimate

A Grammar of Animated Graphics

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DAT8

General Assembly's 2015 Data Science course in Washington, DC

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In-depth-NGS-Data-Analysis-Course

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leafcutter

Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard

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export

R package for streamlined export of graphs and data tables.

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Intro-to-rnaseq-hpc-O2

This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster

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Genomic-Interactive-Visualization-Engine

Genomic Interactive Visualization Engine

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python-wow

Python, so easy, wow!

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ExPecto

predicting expression effects of human genome variants ab initio from sequence

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qvalue

R package to estimate q-values and false discovery rate quantities.

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PrediXcan

PrediXcan Project

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VerifyBamID

VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.

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gwas-download

Easily download publicly available GWAS summary statistics.

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gtex-viz

GTEx Visualizations

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ATAC-pipe

Analysis pipeline for ATAC-seq Data

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forward

Port Forwarding Utility

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rasqual

Robust Allele Specific Quantification and quality controL

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WebGestaltR

R package for WebGestalt

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blood_rnaseq_rare_disease_paper

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APEC

Single cell epigenomic clustering based on accessibility pattern

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IMPACT

Code for creating cell-type-specific regulatory element annotation files

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FM-pipeline

A Fine-Mapping pipeline

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atacr

Analysing Capture Seq Count Data

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BrainSeq_Phase1

code from brainseq phase 1 paper

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BRC_MH_Bioinformatics

Collection of pipelines, workflows and scripts for processing SNP and gene expression arrays and NGS data

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DMSO

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rpe

The RPE project

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trans-PrediXcan

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sldp-display

Display items for SLDP paper

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